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septin11.S septin 11 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447479, updated on 18-Sep-2024

Summary

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Official Symbol
septin11.S
Official Full Name
septin 11 S homeolog
Primary source
Xenbase:XB-GENE-956050
Locus tag
XELAEV_18009527mg
See related
EnsemblRapid:ENSXLAG00005017514
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
sept11; sept11.S
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Genomic context

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See septin11.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (71215121..71281103)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (70636022..70687835)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121399325 Neighboring gene sosondowah ankyrin repeat domain family member B S homeolog Neighboring gene cyclin I S homeolog Neighboring gene cyclin G2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC81799

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cilium assembly IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cytoskeleton-dependent cytokinesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
  
located_in cell division site IEA
Inferred from Electronic Annotation
more info
  
located_in dendritic spine IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
part_of septin complex IEA
Inferred from Electronic Annotation
more info
  
located_in septin ring IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
septin 11 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094186.1 → NP_001087655.1  septin 11 S homeolog

    See identical proteins and their annotated locations for NP_001087655.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081047
    UniProtKB/TrEMBL
    A0A974DU65, Q66J62
    Related
    ENSXLAP00005051741.1, ENSXLAT00005052903.1
    Conserved Domains (2) summary
    cd01850
    Location:40 → 308
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:21 → 374
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    71215121..71281103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041575759.1 → XP_041431693.1  septin 11 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LQ52
    Related
    ENSXLAP00005051785.1, ENSXLAT00005052947.1
    Conserved Domains (1) summary
    cd01850
    Location:40 → 308
    CDC_Septin; CDC/Septin GTPase family

  2. XM_041575766.1 → XP_041431700.1  septin 11 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1LQ55
    Related
    ENSXLAP00005051766.1, ENSXLAT00005052928.1
    Conserved Domains (1) summary
    cd01850
    Location:40 → 308
    CDC_Septin; CDC/Septin GTPase family

  3. XM_041575777.1 → XP_041431711.1  septin 11 S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1LRK3
    Related
    ENSXLAP00005051770.1, ENSXLAT00005052932.1
    Conserved Domains (1) summary
    cd01850
    Location:40 → 308
    CDC_Septin; CDC/Septin GTPase family

  4. XM_041575764.1 → XP_041431698.1  septin 11 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1LQ55
    Conserved Domains (1) summary
    cd01850
    Location:40 → 308
    CDC_Septin; CDC/Septin GTPase family

  5. XM_041575771.1 → XP_041431705.1  septin 11 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1LQ55
    Conserved Domains (1) summary
    cd01850
    Location:40 → 308
    CDC_Septin; CDC/Septin GTPase family

  6. XM_041575773.1 → XP_041431707.1  septin 11 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J1LQ55
    Conserved Domains (1) summary
    cd01850
    Location:40 → 308
    CDC_Septin; CDC/Septin GTPase family

  7. XM_041575780.1 → XP_041431714.1  septin 11 S homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J1LR27
    Related
    ENSXLAP00005051762.1, ENSXLAT00005052924.1
    Conserved Domains (1) summary
    cd01850
    Location:40 → 308
    CDC_Septin; CDC/Septin GTPase family

RNA

  1. XR_005963988.1 RNA Sequence

  2. XR_005963986.1 RNA Sequence

  3. XR_005963987.1 RNA Sequence

  4. XR_005963989.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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