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fam222b.S family with sequence similarity 222 member B S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447477, updated on 4-Nov-2024

Summary

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Official Symbol
fam222b.S
Official Full Name
family with sequence similarity 222 member B S homeolog
Primary source
Xenbase:XB-GENE-5886466
Locus tag
XELAEV_18014159mg
See related
EnsemblRapid:ENSXLAG00005024178 AllianceGenome:Xenbase:XB-GENE-5886466
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
fam222b; c17orf63
Summary
Is expressed in anatomical system; ectoderm; and pharyngeal arch. Orthologous to human FAM222B (family with sequence similarity 222 member B). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See fam222b.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (4287295..4322157, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (4296704..4331643, complement)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene NIMA-related kinase 8 S homeolog Neighboring gene TNF receptor associated factor 4 S homeolog Neighboring gene uncharacterized LOC121400387 Neighboring gene PHD finger protein 12 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC81783

General protein information

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Preferred Names
family with sequence similarity 222 member B S homeolog; protein FAM222B
Names
family with sequence similarity 222, member B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    4287295..4322157 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018248358.2 → XP_018103847.1  protein FAM222B isoform X1

    UniProtKB/TrEMBL
    A0A1L8H4U3, A0A974DFN2, Q66J64

  2. XM_018248359.2 → XP_018103848.1  protein FAM222B isoform X1

    UniProtKB/TrEMBL
    A0A1L8H4U3, A0A974DFN2, Q66J64

  3. XM_041583319.1 → XP_041439253.1  protein FAM222B isoform X2

    UniProtKB/TrEMBL
    A0A8J1MCH2, Q66J64
    Related
    ENSXLAP00005071566.1, ENSXLAT00005073113.1
    Conserved Domains (1) summary
    pfam11498
    Location:146 → 305
    Activator_LAG-3; Transcriptional activator LAG-3

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001094184.1: Suppressed sequence

    Description
    NM_001094184.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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