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tubgcp4.L tubulin gamma complex component 4 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447441, updated on 18-Sep-2024

Summary

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Official Symbol
tubgcp4.L
Official Full Name
tubulin gamma complex component 4 L homeolog
Primary source
Xenbase:XB-GENE-866086
Locus tag
XELAEV_18018292mg
See related
EnsemblRapid:ENSXLAG00005002779
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
76p; tubgcp4
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See tubgcp4.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
18
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (112700227..112729861)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (97258617..97288671)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene provisional ortholog of CART prepropeptide L homeolog Neighboring gene uncharacterized protein MGC145330 L homeolog Neighboring gene tumor protein p53 binding protein 1 L homeolog Neighboring gene microtubule associated protein 1A L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC81229

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables gamma-tubulin binding IEA
Inferred from Electronic Annotation
more info
  
enables microtubule minus-end binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cytoplasmic microtubule organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within microtubule nucleation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within spindle assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in equatorial microtubule organizing center IEA
Inferred from Electronic Annotation
more info
  
part_of gamma-tubulin complex IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule organizing center IEA
Inferred from Electronic Annotation
more info
  
located_in spindle pole IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tubulin gamma complex component 4 L homeolog
Names
tubulin gamma complex associated protein 4 L homeolog
tubulin, gamma complex associated protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094148.1 → NP_001087617.1  tubulin gamma complex component 4 L homeolog

    See identical proteins and their annotated locations for NP_001087617.1

    Status: PROVISIONAL

    Source sequence(s)
    BC081002
    UniProtKB/TrEMBL
    A0A974HTJ0, Q642S3
    Related
    ENSXLAP00005008275.1, ENSXLAT00005008401.1
    Conserved Domains (2) summary
    pfam04130
    Location:350 → 654
    Spc97_Spc98; Spc97 / Spc98 family
    pfam17681
    Location:2 → 347
    GCP_N_terminal; Gamma tubulin complex component N-terminal

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    112700227..112729861
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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