U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

gzf1.S GDNF inducible zinc finger protein 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447437, updated on 18-Sep-2024

Summary

Official Symbol
gzf1.S
Official Full Name
GDNF inducible zinc finger protein 1 S homeolog
Primary source
Xenbase:XB-GENE-1020998
Locus tag
XELAEV_18028801mg
See related
EnsemblRapid:ENSXLAG00005023544
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
gzf1
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See gzf1.S in Genome Data Viewer
Location:
chromosome: 5S
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (25763789..25774967)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (25841422..25852612)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene thrombomodulin Neighboring gene CD93 molecule S homeolog Neighboring gene beta-soluble NSF attachment protein Neighboring gene glycerophosphocholine phosphodiesterase 1 S homeolog

Genomic regions, transcripts, and products

General protein information

Preferred Names
GDNF inducible zinc finger protein 1 S homeolog

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094144.1NP_001087613.1  GDNF inducible zinc finger protein 1 S homeolog

    See identical proteins and their annotated locations for NP_001087613.1

    Status: PROVISIONAL

    Source sequence(s)
    BC080998
    UniProtKB/TrEMBL
    Q66JA5
    Related
    ENSXLAP00005069656.1, ENSXLAT00005071191.1
    Conserved Domains (5) summary
    smart00225
    Location:32133
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:518538
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:21125
    BTB; BTB/POZ domain
    pfam13465
    Location:530555
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:431537
    zf-C2H2_8; C2H2-type zinc ribbon

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    25763789..25774967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018264494.2XP_018119983.1  GDNF inducible zinc finger protein 1 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0VDU4
  2. XM_018264493.2XP_018119982.1  GDNF inducible zinc finger protein 1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8G1M0, A0A974CQW5
    Related
    ENSXLAP00005069681.1, ENSXLAT00005071216.1
    Conserved Domains (4) summary
    COG5048
    Location:361592
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:520540
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18211
    Location:8135
    BTB_POZ_ZBTB23_GZF1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in glial cell line-derived neurotrophic factor-inducible zinc finger protein 1 (GZF1)
    cd20908
    Location:319370
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins
  3. XM_041564037.1XP_041419971.1  GDNF inducible zinc finger protein 1 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8G1M0, A0A974CQW5
    Conserved Domains (4) summary
    COG5048
    Location:361592
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:520540
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18211
    Location:8135
    BTB_POZ_ZBTB23_GZF1; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in glial cell line-derived neurotrophic factor-inducible zinc finger protein 1 (GZF1)
    cd20908
    Location:319370
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins