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sec31b.L SEC31 homolog B, COPII coat complex component L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447425, updated on 17-Aug-2024

Summary

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Official Symbol
sec31b.L
Official Full Name
SEC31 homolog B, COPII coat complex component L homeolog
Primary source
Xenbase:XB-GENE-17336968
Locus tag
XELAEV_18034864mg
See related
EnsemblRapid:ENSXLAG00005027421
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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Location:
chromosome: 7L
Exon count:
29
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7L NC_054383.1 (40276038..40329786, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7L NC_030736.1 (37797279..37851628, complement)

Chromosome 7L - NC_054383.1Genomic Context describing neighboring genes Neighboring gene stearoyl-CoA desaturase (delta-9-desaturase) L homeolog Neighboring gene Wnt family member 8B L homeolog Neighboring gene NADH:ubiquinone oxidoreductase subunit B8 L homeolog Neighboring gene hypoxia inducible factor 1 subunit alpha inhibitor L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC86445

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within COPII-coated vesicle cargo loading IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of COPII vesicle coat IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum exit site IEA
Inferred from Electronic Annotation
more info
  
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SEC31 homolog B, COPII coat complex component L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094132.1 → NP_001087601.1  SEC31 homolog B, COPII coat complex component L homeolog

    See identical proteins and their annotated locations for NP_001087601.1

    Status: PROVISIONAL

    Source sequence(s)
    BC080425
    UniProtKB/TrEMBL
    A0A974CEP0, Q66KF3
    Related
    ENSXLAP00005081874.1, ENSXLAT00005083485.1
    Conserved Domains (4) summary
    COG2319
    Location:66 → 332
    WD40; WD40 repeat [General function prediction only]
    pfam02840
    Location:1107 → 1152
    Prp18; Prp18 domain
    sd00039
    Location:124 → 161
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:120 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054383.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    40276038..40329786 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041568543.1 → XP_041424477.1  SEC31 homolog B, COPII coat complex component L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1L4K5
    Conserved Domains (3) summary
    PHA03247
    Location:839 → 1099
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:124 → 161
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:120 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_041568541.1 → XP_041424475.1  SEC31 homolog B, COPII coat complex component L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1L4K5
    Related
    ENSXLAP00005081693.1, ENSXLAT00005083304.1
    Conserved Domains (3) summary
    PHA03247
    Location:839 → 1099
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:124 → 161
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:120 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_041568542.1 → XP_041424476.1  SEC31 homolog B, COPII coat complex component L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1L4K5
    Conserved Domains (3) summary
    PHA03247
    Location:839 → 1099
    PHA03247; large tegument protein UL36; Provisional
    sd00039
    Location:124 → 161
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:120 → 335
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein Strain
Heading Accession and Version

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