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c1qtnf4.S C1q and TNF related 4 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447394, updated on 17-Aug-2024

Summary

Official Symbol
c1qtnf4.S
Official Full Name
C1q and TNF related 4 S homeolog
Primary source
Xenbase:XB-GENE-975479
Locus tag
XELAEV_18024432mg
See related
EnsemblRapid:ENSXLAG00005019334
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
c1qtnf4
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Genomic context

Location:
chromosome: 4S
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (11979765..11993454, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (11710617..11722164, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene CUGBP Elav-like family member 1 S homeolog Neighboring gene kelch repeat and BTB (POZ) domain containing 4 S homeolog Neighboring gene NADH:ubiquinone oxidoreductase core subunit S3 S homeolog Neighboring gene mitochondrial carrier 2 S homeolog Neighboring gene uncharacterized LOC121393450 Neighboring gene uncharacterized LOC121393453 Neighboring gene serine/threonine-protein kinase mig-15-like

Genomic regions, transcripts, and products

General protein information

Preferred Names
C1q and TNF related 4 S homeolog
Names
C1q and tumor necrosis factor related protein 4 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094101.1NP_001087570.1  C1q and TNF related 4 S homeolog

    See identical proteins and their annotated locations for NP_001087570.1

    Status: PROVISIONAL

    Source sequence(s)
    BC080116
    UniProtKB/TrEMBL
    Q68ET4
    Related
    ENSXLAP00005056855.1, ENSXLAT00005058160.1
    Conserved Domains (1) summary
    pfam00386
    Location:7119
    C1q; C1q domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    11979765..11993454 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041591362.1XP_041447296.1  C1q and TNF related 4 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1N0P9, A0A974D022
    Related
    ENSXLAP00005056868.1, ENSXLAT00005058176.1
    Conserved Domains (1) summary
    pfam00386
    Location:31158
    C1q; C1q domain
  2. XM_018259658.2XP_018115147.1  C1q and TNF related 4 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1N0P9, A0A974D022
    Conserved Domains (1) summary
    pfam00386
    Location:31158
    C1q; C1q domain