U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

cfap410.S cilia and flagella associated protein 410 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447342, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
cfap410.S
Official Full Name
cilia and flagella associated protein 410 S homeolog
Primary source
Xenbase:XB-GENE-6254003
Locus tag
XELAEV_18047397mg
See related
EnsemblRapid:ENSXLAG00005017158 AllianceGenome:Xenbase:XB-GENE-6254003
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
c21orf2; c21orf2.S
Summary
Predicted to act upstream of or within cytoskeleton organization and mRNA splicing, via spliceosome. Predicted to be located in motile cilium. Predicted to be part of U4/U6 x U5 tri-snRNP complex. Human ortholog(s) of this gene implicated in axial spondylometaphyseal dysplasia. Orthologous to human CFAP410 (cilia and flagella associated protein 410). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See cfap410.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (81578193..81597852)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (74891348..74910038)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene 1-phosphatidylinositol 3-phosphate 5-kinase-like Neighboring gene parathyroid hormone 2 receptor S homeolog Neighboring gene uncharacterized XB22063249 S homeolog Neighboring gene posterior protein 3 S homeolog Neighboring gene GULP PTB domain containing engulfment adaptor 1 S homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC83386

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
  
located_in motile cilium IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
cilia and flagella associated protein 410 S homeolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001094049.1 → NP_001087518.1  cilia and flagella associated protein 410 S homeolog

    See identical proteins and their annotated locations for NP_001087518.1

    Status: PROVISIONAL

    Source sequence(s)
    BC080050
    UniProtKB/TrEMBL
    A0A974BUR9, Q68EZ7
    Related
    ENSXLAP00005050658.1, ENSXLAT00005051814.1
    Conserved Domains (4) summary
    sd00031
    Location:20 → 39
    LRR_1; leucine-rich repeat [structural motif]
    sd00035
    Location:42 → 63
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam03343
    Location:177 → 206
    SART-1; SART-1 family
    cd21340
    Location:23 → 146
    PPP1R42; protein phosphatase 1 regulatory subunit 42

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    81578193..81597852
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041577807.1 → XP_041433741.1  cilia and flagella associated protein 410 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974BUR9, Q68EZ7
    Conserved Domains (4) summary
    sd00031
    Location:20 → 39
    LRR_1; leucine-rich repeat [structural motif]
    sd00035
    Location:42 → 63
    LRR_NTF; leucine-rich repeat [structural motif]
    pfam03343
    Location:177 → 206
    SART-1; SART-1 family
    cd21340
    Location:23 → 146
    PPP1R42; protein phosphatase 1 regulatory subunit 42
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.