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atp5pf.S ATP synthase peripheral stalk subunit F6 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447261, updated on 4-Nov-2024

Summary

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Official Symbol
atp5pf.S
Official Full Name
ATP synthase peripheral stalk subunit F6 S homeolog
Primary source
Xenbase:XB-GENE-17332391
Locus tag
XELAEV_18014265mg
See related
EnsemblRapid:ENSXLAG00005019583 AllianceGenome:Xenbase:XB-GENE-17332391
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
atp5; atp5j; atp5j.S
Summary
Predicted to enable proton transmembrane transporter activity. Predicted to act upstream of or within proton motive force-driven ATP synthesis and proton transmembrane transport. Predicted to be located in mitochondrial inner membrane. Predicted to be part of proton-transporting ATP synthase complex, coupling factor F(o). Orthologous to human ATP5PF (ATP synthase peripheral stalk subunit F6). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See atp5pf.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (16740361..16747385, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (16670798..16677832, complement)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene 39S ribosomal protein L39, mitochondrial-like Neighboring gene junctional adhesion molecule 2 S homeolog Neighboring gene GA binding protein transcription factor subunit alpha S homeolog Neighboring gene uncharacterized LOC108709216

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC86324

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables proton transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within proton motive force-driven ATP synthesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  
part_of proton-transporting ATP synthase complex, coupling factor F(o) IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ATP synthase peripheral stalk subunit F6 S homeolog
Names
ATP synthase, H+ transporting, mitochondrial Fo complex subunit F6 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093968.1 → NP_001087437.1  ATP synthase peripheral stalk subunit F6 S homeolog

    See identical proteins and their annotated locations for NP_001087437.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079787
    UniProtKB/TrEMBL
    A0A974HV93, Q68FJ1
    Related
    ENSXLAP00005057493.1, ENSXLAT00005058846.1
    Conserved Domains (1) summary
    pfam05511
    Location:1 → 98
    ATP-synt_F6; Mitochondrial ATP synthase coupling factor 6

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    16740361..16747385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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