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sez6l2.S seizure related 6 homolog like 2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447251, updated on 17-Aug-2024

Summary

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Official Symbol
sez6l2.S
Official Full Name
seizure related 6 homolog like 2 S homeolog
Primary source
Xenbase:XB-GENE-921463
Locus tag
XELAEV_18002358mg
See related
EnsemblRapid:ENSXLAG00005008576
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
sez6; sez6l2; sez6l2.L
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Genomic context

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Location:
chromosome: 9_10S
Exon count:
18
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (113895752..113918518)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694820.1 (3091148..3113445, complement)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene provisional ortholog of nuclear FMR1 interacting protein 2 S homeolog Neighboring gene NME/NM23 nucleoside diphosphate kinase 2 S homeolog Neighboring gene dual specificity phosphatase 14 S homeolog Neighboring gene HIRA interacting protein 3 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC86242

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
seizure protein 6 homolog
Names
SEZ-6
seizure related 6 homolog-like 2 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093958.1 → NP_001087427.1  seizure protein 6 homolog precursor

    See identical proteins and their annotated locations for NP_001087427.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079770
    UniProtKB/Swiss-Prot
    Q6AX42
    Related
    ENSXLAP00005024808.1, ENSXLAT00005025517.1
    Conserved Domains (5) summary
    cd00033
    Location:680 → 740
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00032
    Location:619 → 674
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
    cd00041
    Location:502 → 610
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    pfam00084
    Location:441 → 498
    Sushi; Sushi repeat (SCR repeat)
    cl00049
    Location:151 → 258
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    113895752..113918518
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041577805.1 → XP_041433739.1  seizure protein 6 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LWI4
    Related
    ENSXLAP00005024836.1, ENSXLAT00005025544.1
    Conserved Domains (5) summary
    cd00033
    Location:394 → 449
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    smart00032
    Location:213 → 268
    CCP; Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)
    PHA02927
    Location:569 → 753
    PHA02927; secreted complement-binding protein; Provisional
    cd00041
    Location:452 → 560
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cl00049
    Location:101 → 208
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6AX42.1 GenPept UniProtKB/Swiss-Prot:Q6AX42

Gene LinkOut

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