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sec23ip.L SEC23 interacting protein L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447234, updated on 4-Nov-2024

Summary

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Official Symbol
sec23ip.L
Official Full Name
SEC23 interacting protein L homeolog
Primary source
Xenbase:XB-GENE-17345511
Locus tag
XELAEV_18034295mg
See related
EnsemblRapid:ENSXLAG00005035768 AllianceGenome:Xenbase:XB-GENE-17345511
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to enable metal ion binding activity and phospholipase activity. Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in COPII-coated ER to Golgi transport vesicle. Orthologous to human SEC23IP (SEC23 interacting protein). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See sec23ip.L in Genome Data Viewer
Location:
chromosome: 7L
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7L NC_054383.1 (4873858..4904199, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7L NC_030736.1 (4895816..4926268, complement)

Chromosome 7L - NC_054383.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA19 Neighboring gene small nucleolar RNA SNORA19 Neighboring gene eukaryotic translation initiation factor 3 subunit A L homeolog Neighboring gene minichromosome maintenance complex binding protein L homeolog Neighboring gene inositol polyphosphate-5-phosphatase F L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC84165

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables phospholipase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SEC23 interacting protein L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093941.1 → NP_001087410.1  SEC23 interacting protein L homeolog

    See identical proteins and their annotated locations for NP_001087410.1

    Status: PROVISIONAL

    Source sequence(s)
    BC079740
    UniProtKB/TrEMBL
    A0A974CER3, Q68FK2
    Related
    ENSXLAP00005107383.1, ENSXLAT00005109510.1
    Conserved Domains (4) summary
    cd09584
    Location:641 → 707
    SAM_sec23ip; SAM domain of sec23ip
    smart00454
    Location:646 → 704
    SAM; Sterile alpha motif
    pfam02862
    Location:790 → 995
    DDHD; DDHD domain
    cl02729
    Location:269 → 325
    WWE; WWE domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054383.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    4873858..4904199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041568537.1 → XP_041424471.1  SEC23 interacting protein L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1L4J8, A0A974CER3
    Conserved Domains (1) summary
    cd09584
    Location:637 → 703
    SAM_sec23ip; SAM domain of sec23ip
Nucleotide Protein Strain
Heading Accession and Version

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