yy1.S YY1 transcription factor S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: yy1.S
Official Full Name: YY1 transcription factor S homeolog
Primary source: Xenbase:XB-GENE-961267
Locus tag: XELAEV_18041203mg
See related: EnsemblRapid:ENSXLAG00005004678
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: yy1; xyy1; nf-e1; ucrbp; yy1-a; yy1-b; ino80s; yin-yang-1
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Genomic context

Location:: chromosome: 8S

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	8S	NC_054386.1 (12463093..12479535, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	8S	NC_030739.1 (12392491..12408901, complement)

Chromosome 8S - NC_054386.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of PcG protein complex	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of transcription regulator complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: YY1 transcription factor S homeolog

Names: Yin Yang 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001093935.1 → NP_001087404.1 YY1 transcription factor S homeolog

See identical proteins and their annotated locations for NP_001087404.1

Status: PROVISIONAL

Source sequence(s)

BC079731

UniProtKB/TrEMBL

A0A974C204, Q6AX70

Related

ENSXLAP00005014041.1, ENSXLAT00005014224.1

Conserved Domains (4) summary

COG5048
Location:224 → 363

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:283 → 303

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:281 → 303

zf-C2H2; Zinc finger, C2H2 type

pfam13465
Location:296 → 321

zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

12463093..12479535 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)