rnf115.S ring finger protein 115 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: rnf115.S
Official Full Name: ring finger protein 115 S homeolog
Primary source: Xenbase:XB-GENE-993234
Locus tag: XELAEV_18042874mg
See related: EnsemblRapid:ENSXLAG00005028320 AllianceGenome:Xenbase:XB-GENE-993234
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: rnf115
Summary: Predicted to enable metal ion binding activity and ubiquitin protein ligase activity. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in cytoplasm. Orthologous to human RNF115 (ring finger protein 115). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 8S

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	8S	NC_054386.1 (101178588..101194961, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	8S	NC_030739.1 (96172771..96189427, complement)

Chromosome 8S - NC_054386.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info
enables ubiquitin protein ligase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within protein ubiquitination	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ring finger protein 115 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001093907.1 → NP_001087376.1 ring finger protein 115 S homeolog

See identical proteins and their annotated locations for NP_001087376.1

Status: PROVISIONAL

Source sequence(s)

BC079688

UniProtKB/TrEMBL

A0A974H6S4, Q6AXA5

Related

ENSXLAP00005084504.1, ENSXLAT00005086153.1

Conserved Domains (2) summary

pfam13639
Location:220 → 262

zf-RING_2; Ring finger domain

pfam14369
Location:11 → 41

zinc_ribbon_9; zinc-ribbon

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

101178588..101194961 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)