U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

epyc.S epiphycan S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447160, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
epyc.S
Official Full Name
epiphycan S homeolog
Primary source
Xenbase:XB-GENE-954689
Locus tag
XELAEV_18021244mg
See related
EnsemblRapid:ENSXLAG00005022361 AllianceGenome:Xenbase:XB-GENE-954689
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
epyc
Summary
Predicted to act upstream of or within articular cartilage development and bone development. Predicted to be located in extracellular matrix and extracellular space. Orthologous to human EPYC (epiphycan). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See epyc.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (92134662..92164765)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (90306790..90336888)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene lumican S homeolog Neighboring gene keratocan S homeolog Neighboring gene ATPase, Ca++ transporting, plasma membrane 1 S homeolog Neighboring gene dual specificity phosphatase 6 S homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC85488

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within articular cartilage development IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within bone development IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
epiphycan S homeolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093868.1 → NP_001087337.1  epiphycan S homeolog precursor

    See identical proteins and their annotated locations for NP_001087337.1

    Status: PROVISIONAL

    Source sequence(s)
    BC078578
    UniProtKB/TrEMBL
    Q66KS3
    Related
    ENSXLAP00005065751.1, ENSXLAT00005067270.1
    Conserved Domains (4) summary
    smart00013
    Location:117 → 143
    LRRNT; Leucine rich repeat N-terminal domain
    cd00116
    Location:138 → 297
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:141 → 164
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:142 → 199
    LRR_8; Leucine rich repeat

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    92134662..92164765
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041587652.1 → XP_041443586.1  epiphycan S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GUL8, A0A974D8I0
    Related
    ENSXLAP00005065738.1, ENSXLAT00005067254.1
    Conserved Domains (2) summary
    sd00033
    Location:141 → 164
    LRR_RI; leucine-rich repeat [structural motif]
    cd21340
    Location:121 → 297
    PPP1R42; protein phosphatase 1 regulatory subunit 42

  2. XM_018254307.2 → XP_018109796.1  epiphycan S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GUL8, A0A974D8I0
    Conserved Domains (2) summary
    sd00033
    Location:141 → 164
    LRR_RI; leucine-rich repeat [structural motif]
    cd21340
    Location:121 → 297
    PPP1R42; protein phosphatase 1 regulatory subunit 42
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.