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lsm6.S LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447141, updated on 4-Nov-2024

Summary

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Official Symbol
lsm6.S
Official Full Name
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated S homeolog
Primary source
Xenbase:XB-GENE-1007013
Locus tag
XELAEV_18009250mg
See related
EnsemblRapid:ENSXLAG00005027359 AllianceGenome:Xenbase:XB-GENE-1007013
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
lsm6
Summary
Orthologous to human LSM6 (LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See lsm6.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (46976315..46982607, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (46720764..46727067, complement)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene POU class 4 homeobox 2 S homeolog Neighboring gene solute carrier family 10 member 7 S homeolog Neighboring gene uncharacterized LOC121399289 Neighboring gene zinc finger protein 827 S homeolog Neighboring gene uncharacterized LOC121399290 Neighboring gene SMAD family member 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
Sm protein F; sm protein F
Names
LSM6 homolog, U6 small nuclear RNA associated

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093849.1 → NP_001087318.1  Sm protein F

    See identical proteins and their annotated locations for NP_001087318.1

    Status: PROVISIONAL

    Source sequence(s)
    BC128975
    UniProtKB/TrEMBL
    A0A974DT88, Q66KU9
    Conserved Domains (1) summary
    cd01726
    Location:7 → 74
    LSm6; Like-Sm protein 6

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    46976315..46982607 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041579555.1 → XP_041435489.1  sm protein F

    UniProtKB/TrEMBL
    A0A974DT88, Q66KU9
    Related
    ENSXLAP00005081380.1, ENSXLAT00005082991.1
    Conserved Domains (1) summary
    cd01726
    Location:7 → 74
    LSm6; Like-Sm protein 6
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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