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rab40b.L RAB40B, member RAS oncogene family L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447136, updated on 17-Aug-2024

Summary

Official Symbol
rab40b.L
Official Full Name
RAB40B, member RAS oncogene family L homeolog
Primary source
Xenbase:XB-GENE-865977
Locus tag
XELAEV_18044169mg
See related
EnsemblRapid:ENSXLAG00005018052
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rar; rab40; sec4l; rab40b; xrab40
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Genomic context

Location:
chromosome: 9_10L
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (50987268..51022993, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (40447774..40483503, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene forkhead box K2 L homeolog Neighboring gene uncharacterized LOC121398208 Neighboring gene WD repeat domain 45B L homeolog Neighboring gene potassium channel, two pore domain subfamily K, member 1 L homeolog Neighboring gene ketosamine-3-kinase-like

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC85390

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
RAB40B, member RAS oncogene family L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093844.2NP_001087313.1  RAB40B, member RAS oncogene family L homeolog

    See identical proteins and their annotated locations for NP_001087313.1

    Status: PROVISIONAL

    Source sequence(s)
    BC078543
    UniProtKB/TrEMBL
    A0A974BY15, Q66KV7
    Related
    ENSXLAP00005053296.1, ENSXLAT00005054468.1
    Conserved Domains (3) summary
    cd04121
    Location:9278
    Rab40; Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c
    smart00175
    Location:15177
    RAB; Rab subfamily of small GTPases
    cd03742
    Location:187229
    SOCS_Rab40; SOCS (suppressors of cytokine signaling) box of Rab40-like proteins. Rab40 is part of the Rab family of small GTP-binding proteins that form the largest family within the Ras superfamily. Rab proteins regulate vesicular trafficking pathways, behaving as ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    50987268..51022993 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018234478.2XP_018089967.1  RAB40B, member RAS oncogene family L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974BY15, Q66KV7