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crym.S crystallin mu S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447114, updated on 18-Sep-2024

Summary

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Official Symbol
crym.S
Official Full Name
crystallin mu S homeolog
Primary source
Xenbase:XB-GENE-17334370
Locus tag
XELAEV_18047637mg
See related
EnsemblRapid:ENSXLAG00005007760
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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See crym.S in Genome Data Viewer
Location:
chromosome: 9_10S
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10S NC_054388.1 (97281553..97299460)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10S NC_030741.1 (90633673..90651584)

Chromosome 9_10S - NC_054388.1Genomic Context describing neighboring genes Neighboring gene modulator of smoothened S homeolog Neighboring gene ubiquinol-cytochrome c reductase core protein 2 S homeolog Neighboring gene ankyrin repeat and sterile alpha motif domain containing 4B S homeolog Neighboring gene uncharacterized LOC108702310

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC85331

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables thiomorpholine-carboxylate dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
  
enables thyroid hormone binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within thyroid hormone metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
crystallin mu S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093823.2 → NP_001087292.1  crystallin mu S homeolog

    See identical proteins and their annotated locations for NP_001087292.1

    Status: PROVISIONAL

    Source sequence(s)
    BC078518
    UniProtKB/TrEMBL
    A0A974C0I6, A0A974H1L6, Q66KY1
    Related
    ENSXLAP00005022199.1, ENSXLAT00005022890.1
    Conserved Domains (2) summary
    pfam02423
    Location:13 → 312
    OCD_Mu_crystall; Ornithine cyclodeaminase/mu-crystallin family
    cl21454
    Location:13 → 312
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    97281553..97299460
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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