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rpl11.S ribosomal protein L11 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447109, updated on 4-Nov-2024

Summary

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Official Symbol
rpl11.S
Official Full Name
ribosomal protein L11 S homeolog
Primary source
Xenbase:XB-GENE-1000983
Locus tag
XELAEV_18004063mg
See related
EnsemblRapid:ENSXLAG00005004649 AllianceGenome:Xenbase:XB-GENE-1000983
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rpl11; rpl11.L
Summary
Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 7 and T-cell acute lymphoblastic leukemia. Orthologous to human RPL11 (ribosomal protein L11). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rpl11.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (82660187..82668477, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016694858.1 (587986..596284, complement)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene lysophospholipase 2 S homeolog Neighboring gene elongin A S homeolog Neighboring gene eukaryotic translation elongation factor 1 alpha 1, oocyte form S homeolog Neighboring gene palmitoyl-protein thioesterase 1 S homeolog Neighboring gene cyclase associated actin cytoskeleton regulatory protein 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC85310

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ribosomal protein L11 S homeolog
Names
ribosomal protein L11 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093818.1 → NP_001087287.1  ribosomal protein L11 S homeolog

    See identical proteins and their annotated locations for NP_001087287.1

    Status: PROVISIONAL

    Source sequence(s)
    BC078513
    UniProtKB/TrEMBL
    A0A8J0PZ25, A0A974BRQ9, A0A974CQI0, A0AA97PZC8, Q66KY6
    Related
    ENSXLAP00005013941.1, ENSXLAT00005014123.1
    Conserved Domains (1) summary
    PTZ00156
    Location:4 → 174
    PTZ00156; 60S ribosomal protein L11; Provisional

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    82660187..82668477 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018241751.2 → XP_018097240.1  ribosomal protein L11 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A310UEC1, A0A8J0U8S6, A0A974BRV7, A0A974CQI0, A0AA97PYH3
    Related
    ENSXLAP00005013949.1, ENSXLAT00005014132.1

  2. XM_018241752.2 → XP_018097241.1  ribosomal protein L11 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A310UEC1, A0A8J0U8S6, A0A974BRV7, A0A974CQI0, A0AA97PYH3
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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