hddc2.L HD domain containing 2 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: hddc2.L
Official Full Name: HD domain containing 2 L homeolog
Primary source: Xenbase:XB-GENE-953495
Locus tag: XELAEV_18027002mg
See related: EnsemblRapid:ENSXLAG00005019717 AllianceGenome:Xenbase:XB-GENE-953495
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: hddc2
Summary: Predicted to enable 5'-deoxynucleotidase activity and metal ion binding activity. Predicted to be located in cytoplasm. Orthologous to human HDDC2 (HD domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 5L

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	5L	NC_054379.1 (69370526..69387764, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	5L	NC_030732.1 (65373704..65391585)

Chromosome 5L - NC_054379.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables 5'-deoxynucleotidase activity	IEA Inferred from Electronic Annotation more info
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: 5'-deoxynucleotidase HDDC2

Names: HD domain-containing protein 2

NP_001087264.1

EC 3.1.3.89

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001093795.2 → NP_001087264.1 5'-deoxynucleotidase HDDC2

See identical proteins and their annotated locations for NP_001087264.1

Status: PROVISIONAL

Source sequence(s)

BC078480

UniProtKB/Swiss-Prot

Q66L17

UniProtKB/TrEMBL

A0A974CWT7

Related

ENSXLAP00005057918.1, ENSXLAT00005059273.1

Conserved Domains (1) summary

pfam13023
Location:21 → 177

HD_3; HD domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

69370526..69387764 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)