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tnpo3.S transportin 3 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447036, updated on 18-Sep-2024

Summary

Official Symbol
tnpo3.S
Official Full Name
transportin 3 S homeolog
Primary source
Xenbase:XB-GENE-998618
Locus tag
XELAEV_18020868mg
See related
EnsemblRapid:ENSXLAG00005007330
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
tnpo3
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Genomic context

See tnpo3.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
24
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (64408851..64445077)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (62989854..63026174)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene proline-rich transmembrane protein 4 Neighboring gene DNA-directed RNA polymerase I subunit RPA12-like Neighboring gene uncharacterized LOC121402173 Neighboring gene interferon regulatory factor 5 S homeolog Neighboring gene protocadherin-15-like

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093678.1NP_001087147.1  transportin 3 S homeolog

    See identical proteins and their annotated locations for NP_001087147.1

    Status: PROVISIONAL

    Source sequence(s)
    BC078073
    UniProtKB/TrEMBL
    A0A974D8I7, Q6DCG8
    Related
    ENSXLAP00005021083.1, ENSXLAT00005021725.1
    Conserved Domains (2) summary
    smart00913
    Location:2995
    IBN_N; Importin-beta N-terminal domain
    pfam08389
    Location:120247
    Xpo1; Exportin 1-like protein

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    64408851..64445077
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018254301.2XP_018109790.1  transportin 3 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0UUM6, A0A974D8I7
    Related
    ENSXLAP00005021059.1, ENSXLAT00005021692.1
  2. XM_018254302.2XP_018109791.1  transportin 3 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0UY21, A0A974D8I7