hmg20a.L high mobility group 20A L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: hmg20a.L
Official Full Name: high mobility group 20A L homeolog
Primary source: Xenbase:XB-GENE-955359
Locus tag: XELAEV_18018045mg
See related: EnsemblRapid:ENSXLAG00005035835 AllianceGenome:Xenbase:XB-GENE-955359
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: iBRAF; hmg20a
Summary: Predicted to enable DNA binding activity. Predicted to act upstream of or within regulation of gene expression. Predicted to be located in nucleus. Is expressed in anatomical system; ectoderm; mesenchyme; and pharyngeal arch. Orthologous to human HMG20A (high mobility group 20A). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

Location:: chromosome: 3L

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	3L	NC_054375.1 (98519745..98530557)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	3L	NC_030728.1 (83210480..83221373)

Chromosome 3L - NC_054375.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within regulation of gene expression	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: high mobility group protein 20A

Names: HMG box-containing protein 20A; high-mobility group 20A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001093672.1 → NP_001087141.1 high mobility group protein 20A

See identical proteins and their annotated locations for NP_001087141.1

Status: PROVISIONAL

Source sequence(s)

BC078062

UniProtKB/Swiss-Prot

Q6AZF8

UniProtKB/TrEMBL

A0A974DC96

Conserved Domains (2) summary

COG5648
Location:48 → 182

NHP6B; Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]

cd01390
Location:101 → 166

HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...