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tpd52l2.L tumor protein D52-like 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 447016, updated on 4-Nov-2024

Summary

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Official Symbol
tpd52l2.L
Official Full Name
tumor protein D52-like 2 L homeolog
Primary source
Xenbase:XB-GENE-6254581
Locus tag
XELAEV_18043622mg
See related
EnsemblRapid:ENSXLAG00005032711 AllianceGenome:Xenbase:XB-GENE-6254581
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
d54; tpd52l2
Summary
Predicted to be located in cytoplasm. Orthologous to human TPD52L2 (TPD52 like 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See tpd52l2.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (18353207..18364119, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (18069459..18080354, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene traf2 and NCK-interacting protein kinase Neighboring gene E3 ubiquitin-protein ligase TRIM8-like Neighboring gene dnaJ homolog subfamily C member 5-like Neighboring gene zinc finger protein 704 Neighboring gene zinc finger and BTB domain containing 46 L homeolog Neighboring gene lck-interacting transmembrane adapter 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC82728

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tumor protein D52-like 2 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093658.1 → NP_001087127.1  tumor protein D52-like 2 L homeolog

    See identical proteins and their annotated locations for NP_001087127.1

    Status: PROVISIONAL

    Source sequence(s)
    BC078027
    UniProtKB/TrEMBL
    A0A974BSS1, A0A974H2I4, Q6AZG9
    Related
    ENSXLAP00005098104.1, ENSXLAT00005099911.1
    Conserved Domains (1) summary
    pfam04201
    Location:48 → 218
    TPD52; Tumour protein D52 family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    18353207..18364119 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018234470.2 → XP_018089959.1  tumor protein D52-like 2 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J0TUG9, A0A974BSS1
    Related
    ENSXLAP00005098254.1, ENSXLAT00005100063.1

  2. XM_018234474.2 → XP_018089963.1  tumor protein D52-like 2 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0TRG9, A0A974BSS1

  3. XM_018234467.2 → XP_018089956.1  tumor protein D52-like 2 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0TSA3, A0A974BSS1
    Related
    ENSXLAP00005098284.1, ENSXLAT00005100095.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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