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zdhhc3.L zinc finger DHHC-type containing 3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446999, updated on 4-Nov-2024

Summary

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Official Symbol
zdhhc3.L
Official Full Name
zinc finger DHHC-type containing 3 L homeolog
Primary source
Xenbase:XB-GENE-17337907
Locus tag
XELAEV_18031167mg
See related
EnsemblRapid:ENSXLAG00005009705 AllianceGenome:Xenbase:XB-GENE-17337907
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
godz; znf373
Summary
Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be located in membrane. Is expressed in genital system. Orthologous to human ZDHHC3 (zinc finger DHHC-type palmitoyltransferase 3). [provided by Alliance of Genome Resources, Nov 2024]
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See zdhhc3.L in Genome Data Viewer
Location:
chromosome: 6L
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (58245953..58272656)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (52910538..52937306)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene C-type lectin domain family 3 member B L homeolog Neighboring gene exosome complex component RRP42-like Neighboring gene small cytoplasmic RNA Y-alpha Neighboring gene RNA, Ro-associated Y5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC82349

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables acyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein-cysteine S-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger DHHC-type containing 3 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093641.1 → NP_001087110.1  zinc finger DHHC-type containing 3 L homeolog

    See identical proteins and their annotated locations for NP_001087110.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077995
    UniProtKB/TrEMBL
    A0A974HFH2, Q6DCL3
    Related
    ENSXLAP00005028438.1, ENSXLAT00005029175.1
    Conserved Domains (1) summary
    pfam01529
    Location:128 → 254
    zf-DHHC; DHHC palmitoyltransferase

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    58245953..58272656
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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