ss18l1.S synovial sarcoma translocation gene on chromosome 18-like 1 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: ss18l1.S
Official Full Name: synovial sarcoma translocation gene on chromosome 18-like 1 S homeolog
Primary source: Xenbase:XB-GENE-993778
Locus tag: XELAEV_18046235mg
See related: EnsemblRapid:ENSXLAG00005031805
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: crest; ss18l1
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Genomic context

Location:: chromosome: 9_10S

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10S	NC_054388.1 (13651369..13666398, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10S	NC_030741.1 (13550967..13565918, complement)

Chromosome 9_10S - NC_054388.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables transcription coactivator activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within chromatin organization	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in intracellular organelle	IEA Inferred from Electronic Annotation more info
located_in membrane-bounded organelle	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: calcium-responsive transactivator

Names: ss18-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001093632.1 → NP_001087101.1 calcium-responsive transactivator

See identical proteins and their annotated locations for NP_001087101.1

Status: PROVISIONAL

Source sequence(s)

BC077557

UniProtKB/Swiss-Prot

Q6DDK1

UniProtKB/TrEMBL

A0A974BST4

Related

ENSXLAP00005095322.1, ENSXLAT00005097054.1

Conserved Domains (1) summary

pfam05030
Location:14 → 73

SSXT; SSXT protein (N-terminal region)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

13651369..13666398 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)