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commd5.L COMM domain containing 5 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446979, updated on 17-Aug-2024

Summary

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Official Symbol
commd5.L
Official Full Name
COMM domain containing 5 L homeolog
Primary source
Xenbase:XB-GENE-952091
Locus tag
XELAEV_18038873mg
See related
EnsemblRapid:ENSXLAG00005011150
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
commd5
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Genomic context

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Location:
chromosome: 8L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (51188363..51198052)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (38023725..38052267)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene homeobox protein ARX Neighboring gene family with sequence similarity 199, X-linked L homeolog Neighboring gene LON peptidase N-terminal domain and ring finger 3 L homeolog Neighboring gene KIAA1210 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC84249

General protein information

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Preferred Names
COMM domain containing 5 L homeolog; COMM domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    51188363..51198052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041572759.1 → XP_041428693.1  COMM domain-containing protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A8J1LGK6
    Conserved Domains (1) summary
    cd04753
    Location:80 → 189
    Commd5_HCaRG; COMM_Domain containing protein 5, also called HCaRG (hypertension-related, calcium-regulated gene). HCaRG is a nuclear protein that might be involved in cell proliferation; it is negatively regulated by extracellular calcium concentration, and its basal ...

  2. XM_041572758.1 → XP_041428692.1  COMM domain-containing protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A974C7Y8, Q6DJH0
    Related
    ENSXLAP00005032784.1, ENSXLAT00005033576.1
    Conserved Domains (1) summary
    cd04753
    Location:115 → 224
    Commd5_HCaRG; COMM_Domain containing protein 5, also called HCaRG (hypertension-related, calcium-regulated gene). HCaRG is a nuclear protein that might be involved in cell proliferation; it is negatively regulated by extracellular calcium concentration, and its basal ...

  3. XM_041572760.1 → XP_041428694.1  COMM domain-containing protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A8J1LGK6
    Conserved Domains (1) summary
    cd04753
    Location:80 → 189
    Commd5_HCaRG; COMM_Domain containing protein 5, also called HCaRG (hypertension-related, calcium-regulated gene). HCaRG is a nuclear protein that might be involved in cell proliferation; it is negatively regulated by extracellular calcium concentration, and its basal ...

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001093622.1: Suppressed sequence

    Description
    NM_001093622.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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