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psma1.S proteasome subunit alpha 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446975, updated on 4-Nov-2024

Summary

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Official Symbol
psma1.S
Official Full Name
proteasome subunit alpha 1 S homeolog
Primary source
Xenbase:XB-GENE-17331110
Locus tag
XELAEV_18024624mg
See related
EnsemblRapid:ENSXLAG00005006081 AllianceGenome:Xenbase:XB-GENE-17331110
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
pros30
Summary
Predicted to act upstream of or within proteasomal protein catabolic process and ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome core complex, alpha-subunit complex. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See psma1.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (21924071..21930790, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (21371290..21378002, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene RAS related 2 S homeolog Neighboring gene COPI coat complex subunit beta 1 S homeolog Neighboring gene phosphodiesterase 3B S homeolog Neighboring gene cytochrome P450 family 2 subfamily R member 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of alpha-type subunits of the Xenopus 20S proteasome and analysis of their changes during the meiotic cell cycle. Wakata Y, et al. BMC Biochem, 2004 Dec 17. PMID 15603592, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within proteasomal protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of proteasome complex IEA
Inferred from Electronic Annotation
more info
  
part_of proteasome core complex IEA
Inferred from Electronic Annotation
more info
  
part_of proteasome core complex, alpha-subunit complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
proteasome subunit alpha type-1
Names
20S proteasome alpha6 subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    21924071..21930790 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018260359.1 → XP_018115848.1  proteasome subunit alpha type-1

    UniProtKB/TrEMBL
    Q5XGP0, Q68A88
    Related
    ENSXLAP00005018204.1, ENSXLAT00005018500.1
Nucleotide Protein Strain
Heading Accession and Version

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