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smap1.L small ArfGAP 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446881, updated on 4-Nov-2024

Summary

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Official Symbol
smap1.L
Official Full Name
small ArfGAP 1 L homeolog
Primary source
Xenbase:XB-GENE-979119
Locus tag
XELAEV_18027393mg
See related
EnsemblRapid:ENSXLAG00005034793 AllianceGenome:Xenbase:XB-GENE-979119
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
smap1
Summary
Predicted to enable GTPase activator activity and metal ion binding activity. Predicted to act upstream of or within regulation of clathrin-dependent endocytosis. Predicted to be located in cytoplasm. Orthologous to human SMAP1 (small ArfGAP 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See smap1.L in Genome Data Viewer
Location:
chromosome: 5L
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5L NC_054379.1 (97339142..97429952, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5L NC_030732.1 (94340800..94431860)

Chromosome 5L - NC_054379.1Genomic Context describing neighboring genes Neighboring gene asparaginase like 1 L homeolog Neighboring gene opioid growth factor receptor-like 1 L homeolog Neighboring gene beta-1,3-glucuronyltransferase 2 L homeolog Neighboring gene uncharacterized LOC108716932 Neighboring gene succinate dehydrogenase complex assembly factor 4 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC80897

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of clathrin-dependent endocytosis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small ArfGAP 1 L homeolog; stromal membrane-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054379.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    97339142..97429952 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018261973.2 → XP_018117462.1  stromal membrane-associated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A1L8G9P3, A0A974HJL8
    Related
    ENSXLAP00005104069.1, ENSXLAT00005106088.1

  2. XM_018261974.2 → XP_018117463.1  stromal membrane-associated protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A1L8GA06, A0A974HK91
    Related
    ENSXLAP00005104134.1, ENSXLAT00005106153.1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001093577.1: Suppressed sequence

    Description
    NM_001093577.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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