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atf5.2.S activating transcription factor 5, gene 2 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446834, updated on 4-Nov-2024

Summary

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Official Symbol
atf5.2.S
Official Full Name
activating transcription factor 5, gene 2 S homeolog
Primary source
Xenbase:XB-GENE-5902505
Locus tag
XELAEV_18037658mg
See related
EnsemblRapid:ENSXLAG00005012447 AllianceGenome:Xenbase:XB-GENE-5902505
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
atf5; atf5.2
Summary
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to act upstream of or within regulation of apoptotic process and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in ectoderm; nervous system; and sensory system. Orthologous to human ATF5 (activating transcription factor 5). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See atf5.2.S in Genome Data Viewer
Location:
chromosome: 7S
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7S NC_054384.1 (90943382..90949824, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7S NC_030737.1 (71802177..71808619, complement)

Chromosome 7S - NC_054384.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein ZSWIM9 Neighboring gene uncharacterized protein ZSWIM9-like Neighboring gene cyclic AMP-dependent transcription factor ATF-5 Neighboring gene SH3 domain binding kinase 1 like 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80643

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
activating transcription factor 5, gene 2 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093530.1 → NP_001086999.1  activating transcription factor 5, gene 2 S homeolog

    See identical proteins and their annotated locations for NP_001086999.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077877
    UniProtKB/TrEMBL
    A0A974CCQ4, Q6DCW2
    Related
    ENSXLAP00005036506.1, ENSXLAT00005037415.1
    Conserved Domains (1) summary
    cd14692
    Location:235 → 297
    bZIP_ATF4; Basic leucine zipper (bZIP) domain of Activating Transcription Factor-4 (ATF-4) and similar proteins: a DNA-binding and dimerization domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054384.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    90943382..90949824 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials