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ube2m.L ubiquitin conjugating enzyme E2M L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446800, updated on 18-Sep-2024

Summary

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Official Symbol
ube2m.L
Official Full Name
ubiquitin conjugating enzyme E2M L homeolog
Primary source
Xenbase:XB-GENE-1005530
Locus tag
XELAEV_18035838mg
See related
EnsemblRapid:ENSXLAG00005035860
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ubc12; ube2m
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Genomic context

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See ube2m.L in Genome Data Viewer
Location:
chromosome: 7L
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7L NC_054383.1 (107853936..107874508)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7L NC_030736.1 (97455597..97476240)

Chromosome 7L - NC_054383.1Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 28 L homeolog Neighboring gene uncharacterized LOC121395599 Neighboring gene uncharacterized LOC121395600 Neighboring gene charged multivesicular body protein 2A L homeolog Neighboring gene uncharacterized XB5727854 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80512

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables NEDD8 conjugating enzyme activity IEA
Inferred from Electronic Annotation
more info
  
enables NEDD8 transferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-protein transferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein modification process ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within protein neddylation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein neddylation ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
NEDD8-conjugating enzyme Ubc12
Names
NEDD8 carrier protein
NEDD8 protein ligase
ubiquitin-conjugating enzyme E2M (UBC12 homolog)
ubiquitin-conjugating enzyme E2M (UBC12 homolog, yeast)
NP_001086965.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093496.1 → NP_001086965.1  NEDD8-conjugating enzyme Ubc12

    See identical proteins and their annotated locations for NP_001086965.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077833
    UniProtKB/Swiss-Prot
    Q6DCZ9
    UniProtKB/TrEMBL
    A0A974HCF3
    Related
    ENSXLAP00005107222.1, ENSXLAT00005109337.1
    Conserved Domains (2) summary
    COG5078
    Location:26 → 171
    COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
    pfam00179
    Location:33 → 168
    UQ_con; Ubiquitin-conjugating enzyme

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054383.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    107853936..107874508
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6DCZ9.1 GenPept UniProtKB/Swiss-Prot:Q6DCZ9

Gene LinkOut

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Molecular Biology Databases
Research Materials