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hnrnph1.L heterogeneous nuclear ribonucleoprotein H1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446758, updated on 4-Nov-2024

Summary

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Official Symbol
hnrnph1.L
Official Full Name
heterogeneous nuclear ribonucleoprotein H1 L homeolog
Primary source
Xenbase:XB-GENE-6000225
Locus tag
XELAEV_18017116mg
See related
EnsemblRapid:ENSXLAG00005000421 AllianceGenome:Xenbase:XB-GENE-6000225
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
hnrph; hnrnph; hnrph1; hnrph2; hnrnph1; hnrnph1-a; hnrnph1-b
Summary
Predicted to enable RNA binding activity. Predicted to be part of ribonucleoprotein complex. Human ortholog(s) of this gene implicated in Sjogren's syndrome. Orthologous to human HNRNPH1 (heterogeneous nuclear ribonucleoprotein H1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See hnrnph1.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (38265858..38280297)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (24763736..24778269)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 4 member 9 L homeolog Neighboring gene deoxycytidine kinase, gene 2 L homeolog Neighboring gene RUN and FYVE domain containing 1 L homeolog Neighboring gene heparin-binding EGF-like growth factor L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80081, MGC130700

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
heterogeneous nuclear ribonucleoprotein H1 L homeolog
Names
heterogeneous nuclear ribonucleoprotein H1 (H) L homeolog
heterogeneous nuclear ribonucleoprotein H2 (H')

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093454.1 → NP_001086923.1  heterogeneous nuclear ribonucleoprotein H1 L homeolog

    See identical proteins and their annotated locations for NP_001086923.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077770
    UniProtKB/TrEMBL
    A0A974DAL3, Q6DD57
    Related
    ENSXLAP00005001176.1, ENSXLAT00005001211.1
    Conserved Domains (5) summary
    pfam08080
    Location:251 → 278
    zf-RNPHF; RNPHF zinc finger
    COG0724
    Location:2 → 267
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12729
    Location:9 → 87
    RRM1_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    cd12734
    Location:277 → 352
    RRM3_hnRNPH_hnRNPH2_hnRNPF; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein hnRNP H , hnRNP H2, hnRNP F and similar proteins
    cl17169
    Location:92 → 187
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    38265858..38280297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018251032.2 → XP_018106521.1  heterogeneous nuclear ribonucleoprotein H1 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0URL4, A0A974DAL3

  2. XM_018251031.2 → XP_018106520.1  heterogeneous nuclear ribonucleoprotein H1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974DAL3, Q6DD57
Nucleotide Protein Strain
Heading Accession and Version

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