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vps36.L vacuolar protein sorting 36 homolog L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446727, updated on 17-Aug-2024

Summary

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Official Symbol
vps36.L
Official Full Name
vacuolar protein sorting 36 homolog L homeolog
Primary source
Xenbase:XB-GENE-6255362
Locus tag
XELAEV_18013675mg
See related
EnsemblRapid:ENSXLAG00005034308
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
vps36
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Genomic context

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Location:
chromosome: 2L
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (158706073..158727089)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (152802415..152823426)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene NIMA-related kinase 5 L homeolog Neighboring gene cytoskeleton associated protein 2 L homeolog Neighboring gene thrombospondin type 1 domain containing 1 L homeolog Neighboring gene fibrinogen like 1B L homeolog Neighboring gene transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. bicoid RNA localization requires specific binding of an endosomal sorting complex. Irion U, et al. Nature, 2007 Feb 1. PMID 17268469, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC84611

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables phosphatidylinositol-3-phosphate binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within endosome transport via multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ESCRT II complex IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in endosome ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
vacuolar protein-sorting-associated protein 36
Names
ESCRT-II complex subunit VPS36

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093423.1 → NP_001086892.1  vacuolar protein-sorting-associated protein 36

    See identical proteins and their annotated locations for NP_001086892.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077615
    UniProtKB/Swiss-Prot
    Q6DDF4
    UniProtKB/TrEMBL
    A0A974DQ26
    Related
    ENSXLAP00005102781.1, ENSXLAT00005104776.1
    Conserved Domains (2) summary
    cd13226
    Location:1 → 128
    PH-GRAM-like_Eap45; Pleckstrin homology-like domain or GLUE (GRAM-like ubiquitin-binding in Eap45) domain of Eap45
    pfam04157
    Location:157 → 371
    EAP30; EAP30/Vps36 family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    158706073..158727089
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041581024.1 → XP_041436958.1  vacuolar protein-sorting-associated protein 36 isoform X1

    UniProtKB/TrEMBL
    A0A8J1M5J7, A0A974DQ26
    Related
    ENSXLAP00005102867.1, ENSXLAT00005104867.1
    Conserved Domains (2) summary
    pfam04157
    Location:133 → 349
    EAP30; EAP30/Vps36 family
    cl17171
    Location:1 → 105
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6DDF4.1 GenPept UniProtKB/Swiss-Prot:Q6DDF4

Gene LinkOut

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