U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

atp13a4.S ATPase type 13A4 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446724, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
atp13a4.S
Official Full Name
ATPase type 13A4 S homeolog
Primary source
Xenbase:XB-GENE-978093
Locus tag
XELAEV_18029671mg
See related
EnsemblRapid:ENSXLAG00005008622
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
atp13a4
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See atp13a4.S in Genome Data Viewer
Location:
chromosome: 5S
Exon count:
33
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (93566039..93629788)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (88106733..88170652)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene hes family bHLH transcription factor 1 S homeolog Neighboring gene optic atrophy 1 (autosomal dominant) S homeolog Neighboring gene P2X purinoceptor 7-like Neighboring gene phospholipase A and acyltransferase 1 S homeolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC84593

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATPase-coupled monoatomic cation transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables P-type ion transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables polyamine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within polyamine transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
probable cation-transporting ATPase 13A4
NP_001086889.2
XP_018119954.1
XP_018119955.1
XP_018119956.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093420.2 → NP_001086889.2  probable cation-transporting ATPase 13A4

    Status: VALIDATED

    Source sequence(s)
    BC077611, BJ097233
    UniProtKB/TrEMBL
    A0A8J0PX20, A0A974CRT8
    Related
    ENSXLAP00005025000.1, ENSXLAT00005025709.1
    Conserved Domains (6) summary
    COG4087
    Location:817 → 866
    COG4087; Soluble P-type ATPase [General function prediction only]
    TIGR01657
    Location:52 → 1119
    P-ATPase-V; P-type ATPase of unknown pump specificity (type V)
    pfam00122
    Location:224 → 467
    E1-E2_ATPase; E1-E2 ATPase
    pfam00690
    Location:156 → 214
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam12409
    Location:17 → 133
    P5-ATPase; P5-type ATPase cation transporter
    pfam13246
    Location:589 → 631
    Cation_ATPase; Cation transport ATPase (P-type)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    93566039..93629788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018264465.2 → XP_018119954.1  probable cation-transporting ATPase 13A4 isoform X1

    UniProtKB/TrEMBL
    A0A8J0VEM1, A0A974CRT8
    Related
    ENSXLAP00005025024.1, ENSXLAT00005025733.1

  2. XM_018264466.2 → XP_018119955.1  probable cation-transporting ATPase 13A4 isoform X2

    UniProtKB/TrEMBL
    A0A8J0VJ18, A0A974CRT8
    Related
    ENSXLAP00005025045.1, ENSXLAT00005025754.1

  3. XM_018264467.2 → XP_018119956.1  probable cation-transporting ATPase 13A4 isoform X3

    UniProtKB/TrEMBL
    A0A8J0VDS5, A0A974CRT8
    Related
    ENSXLAP00005025090.1, ENSXLAT00005025799.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.