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scamp3.L secretory carrier membrane protein 3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446723, updated on 4-Nov-2024

Summary

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Official Symbol
scamp3.L
Official Full Name
secretory carrier membrane protein 3 L homeolog
Primary source
Xenbase:XB-GENE-876984
Locus tag
XELAEV_18040943mg
See related
EnsemblRapid:ENSXLAG00005003873 AllianceGenome:Xenbase:XB-GENE-876984
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
scamp3
Summary
Predicted to act upstream of or within protein transport. Predicted to be located in recycling endosome membrane and trans-Golgi network membrane. Orthologous to human SCAMP3 (secretory carrier membrane protein 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See scamp3.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (134790024..134796832, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (119534154..119541210, complement)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase TRIM39 Neighboring gene endosomal transmembrane epsin interactor 3 L homeolog Neighboring gene complexin-3 Neighboring gene CDC like kinase 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Protein interactomes of protein phosphatase 2A B55 regulatory subunits reveal B55-mediated regulation of replication protein A under replication stress. Wang F, et al. Sci Rep, 2018 Feb 8. PMID 29422626, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC84585

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in recycling endosome membrane IEA
Inferred from Electronic Annotation
more info
  
located_in trans-Golgi network membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
secretory carrier membrane protein 3 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093419.1 → NP_001086888.1  secretory carrier membrane protein 3 L homeolog

    See identical proteins and their annotated locations for NP_001086888.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077610
    UniProtKB/TrEMBL
    A0A974CBN3, Q6DDF8
    Related
    ENSXLAP00005011562.1, ENSXLAT00005011735.1
    Conserved Domains (1) summary
    pfam04144
    Location:133 → 309
    SCAMP; SCAMP family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    134790024..134796832 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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