thumpd2.L THUMP domain containing 2 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: thumpd2.L
Official Full Name: THUMP domain containing 2 L homeolog
Primary source: Xenbase:XB-GENE-965050
Locus tag: XELAEV_18026667mg
See related: EnsemblRapid:ENSXLAG00005017542
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: thumpd2
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Genomic context

Location:: chromosome: 5L

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	5L	NC_054379.1 (42400368..42413635)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	5L	NC_030732.1 (41235803..41249068)

Chromosome 5L - NC_054379.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables methyltransferase activity	IEA Inferred from Electronic Annotation more info
enables tRNA (guanine) methyltransferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within RNA processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within methylation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within tRNA methylation	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: THUMP domain containing 2 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001093392.1 → NP_001086861.1 THUMP domain containing 2 L homeolog

See identical proteins and their annotated locations for NP_001086861.1

Status: PROVISIONAL

Source sequence(s)

BC077569

UniProtKB/TrEMBL

Q6DDJ1

Related

ENSXLAP00005051784.1, ENSXLAT00005052946.1

Conserved Domains (2) summary

smart00981
Location:158 → 236

THUMP; The THUMP domain is named after after thiouridine synthases, methylases and PSUSs

cl17173
Location:246 → 385

AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...