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snip1.L Smad nuclear interacting protein 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446681, updated on 17-Aug-2024

Summary

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Official Symbol
snip1.L
Official Full Name
Smad nuclear interacting protein 1 L homeolog
Primary source
Xenbase:XB-GENE-6255657
Locus tag
XELAEV_18012514mg
See related
EnsemblRapid:ENSXLAG00005001799
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
snip1b; snip1-a; snip1-b
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Genomic context

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Location:
chromosome: 2L
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (88330624..88336167)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (82781861..82787404)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene LSM10, U7 small nuclear RNA associated L homeolog Neighboring gene AFG2 interacting ribosome maturation factor L homeolog Neighboring gene E3 ubiquitin-protein ligase TRIM62 Neighboring gene MYST/Esa1-associated factor 6 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within miRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Smad nuclear interacting protein 1 L homeolog
Names
Smad nuclear interacting protein 1 b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093377.1 → NP_001086846.1  Smad nuclear interacting protein 1 L homeolog

    See identical proteins and their annotated locations for NP_001086846.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077541
    UniProtKB/TrEMBL
    A0A974HYG1, Q6DDL6
    Related
    ENSXLAP00005005376.1, ENSXLAT00005005482.1
    Conserved Domains (2) summary
    COG1716
    Location:252 → 358
    FHA; Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms]
    cd00060
    Location:235 → 350
    FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    88330624..88336167
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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