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rpa3.S replication protein A3 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446650, updated on 18-Sep-2024

Summary

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Official Symbol
rpa3.S
Official Full Name
replication protein A3 S homeolog
Primary source
Xenbase:XB-GENE-17339932
Locus tag
XELAEV_18032996mg
See related
EnsemblRapid:ENSXLAG00005025311
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rpa3; repa3
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See rpa3.S in Genome Data Viewer
Location:
chromosome: 6S
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6S NC_054382.1 (27268566..27274654, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6S NC_030735.1 (26744968..26751060, complement)

Chromosome 6S - NC_054382.1Genomic Context describing neighboring genes Neighboring gene core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 S homeolog Neighboring gene missing oocyte, meiosis regulator, homolog S homeolog Neighboring gene glucocorticoid induced 1 S homeolog Neighboring gene islet cell autoantigen 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC82610

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables single-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA recombination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within DNA repair IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within DNA replication IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within base-excision repair IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mismatch repair IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of DNA replication factor A complex IEA
Inferred from Electronic Annotation
more info
  
located_in nuclear lumen IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in site of double-strand break IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
replication protein A3 S homeolog
Names
replication protein A3, 14kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093346.1 → NP_001086815.1  replication protein A3 S homeolog

    See identical proteins and their annotated locations for NP_001086815.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077497
    UniProtKB/TrEMBL
    A0A974CIK6, Q6AZP5
    Related
    ENSXLAP00005075216.1, ENSXLAT00005076797.1
    Conserved Domains (1) summary
    pfam08661
    Location:6 → 113
    Rep_fac-A_3; Replication factor A protein 3

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054382.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    27268566..27274654 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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