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papss1.S 3'-phosphoadenosine 5'-phosphosulfate synthase 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446649, updated on 18-Sep-2024

Summary

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Official Symbol
papss1.S
Official Full Name
3'-phosphoadenosine 5'-phosphosulfate synthase 1 S homeolog
Primary source
Xenbase:XB-GENE-17332831
Locus tag
XELAEV_18009389mg
See related
EnsemblRapid:ENSXLAG00005003484
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
sk1; papss; atpsk1; papss1
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Genomic context

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See papss1.S in Genome Data Viewer
Location:
chromosome: 1S
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (60312275..60360836)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (59840670..59864653)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene pyroglutamylated RFamide peptide receptor S homeolog Neighboring gene sphingomyelin synthase 2 S homeolog Neighboring gene dickkopf WNT signaling pathway inhibitor 2 S homeolog Neighboring gene uncharacterized LOC121399310

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC82588

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables adenylylsulfate kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within sulfate assimilation IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
3'-phosphoadenosine 5'-phosphosulfate synthase 1 S homeolog; 3'-phosphoadenosine 5'-phosphosulfate synthase 1
NP_001086814.1
XP_041431535.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093345.1 → NP_001086814.1  3'-phosphoadenosine 5'-phosphosulfate synthase 1 S homeolog

    See identical proteins and their annotated locations for NP_001086814.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077492
    UniProtKB/TrEMBL
    A0A974DSB7, Q6DDP8
    Related
    ENSXLAP00005010359.1, ENSXLAT00005010525.1
    Conserved Domains (2) summary
    cd02027
    Location:54 → 204
    APSK; Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of ...
    cl00015
    Location:254 → 416
    nt_trans; nucleotidyl transferase superfamily

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    60312275..60360836
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041575601.1 → XP_041431535.1  3'-phosphoadenosine 5'-phosphosulfate synthase 1 isoform X1

    UniProtKB/TrEMBL
    A0A8J1LS24, A0A974DYR9
    Related
    ENSXLAP00005010391.1, ENSXLAT00005010557.1
    Conserved Domains (2) summary
    cd00517
    Location:254 → 617
    ATPS; ATP-sulfurylase
    cd02027
    Location:54 → 204
    APSK; Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of ...
Nucleotide Protein Strain
Heading Accession and Version

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