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neff1.S neuronal intermediate filament family member 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446639, updated on 4-Nov-2024

Summary

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Official Symbol
neff1.S
Official Full Name
neuronal intermediate filament family member 1 S homeolog
Primary source
Xenbase:XB-GENE-6255668
Locus tag
XELAEV_18020362mg
See related
EnsemblRapid:ENSXLAG00005017505 AllianceGenome:Xenbase:XB-GENE-6255668
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
nif; XNIF; nifa; xina; ina-a; ina-b; inexa; nif.S; CTDSPL; xefiltin
Summary
Predicted to enable structural molecule activity. Predicted to be a structural constituent of cytoskeleton. Predicted to act upstream of or within intermediate filament organization. Predicted to be located in cytoplasm and intermediate filament. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See neff1.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (31688974..31698581, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (30535013..30544627, complement)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene TIA1 cytotoxic granule-associated RNA binding protein S homeolog Neighboring gene chromosome 3 C2orf42 homolog S homeolog Neighboring gene MAX dimerization protein 1 S homeolog Neighboring gene small nuclear ribonucleoprotein, U4/U6.U5 27kDa subunit S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC82496

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within intermediate filament organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in intermediate filament IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
neuronal intermediate filament family member 1 S homeolog
Names
intermediate filament protein
internexin neuronal intermediate filament protein, alpha
low molecular weight neuronal intermediate filament S homeolog
low molecular weight neuronal intermediate filament a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093335.1 → NP_001086804.1  neuronal intermediate filament family member 1 S homeolog

    See identical proteins and their annotated locations for NP_001086804.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077476
    UniProtKB/TrEMBL
    A0A974DFE7, A0A974HQL2, Q6DDQ8
    Related
    ENSXLAP00005051646.1, ENSXLAT00005052808.1
    Conserved Domains (3) summary
    pfam00038
    Location:86 → 397
    Filament; Intermediate filament protein
    pfam04732
    Location:7 → 85
    Filament_head; Intermediate filament head (DNA binding) region
    pfam07798
    Location:298 → 410
    DUF1640; Protein of unknown function (DUF1640)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    31688974..31698581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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