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sf3b4.L splicing factor 3b subunit 4 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446629, updated on 3-Jul-2024

Summary

Official Symbol
sf3b4.L
Official Full Name
splicing factor 3b subunit 4 L homeolog
Primary source
Xenbase:XB-GENE-17335927
Locus tag
XELAEV_18040405mg
See related
EnsemblRapid:ENSXLAG00005028197
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
spx
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Genomic context

See sf3b4.L in Genome Data Viewer
Location:
chromosome: 8L
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (119943287..119951122, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (105100447..105108266, complement)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene bolA family member 1 L homeolog Neighboring gene synaptic vesicle glycoprotein 2A L homeolog Neighboring gene myotubularin related protein 11 L homeolog Neighboring gene OTU deubiquitinase 7B L homeolog

Genomic regions, transcripts, and products

General gene information

Clone Names

  • MGC82420

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
splicing factor 3b subunit 4 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093325.1NP_001086794.1  splicing factor 3b subunit 4 L homeolog

    See identical proteins and their annotated locations for NP_001086794.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077458
    UniProtKB/TrEMBL
    A0A974CAI0, Q6AZR0
    Conserved Domains (2) summary
    cd12334
    Location:1588
    RRM1_SF3B4; RNA recognition motif 1 in splicing factor 3B subunit 4 (SF3B4) and similar proteins
    cd12335
    Location:99181
    RRM2_SF3B4; RNA recognition motif 2 in splicing factor 3B subunit 4 (SF3B4) and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    119943287..119951122 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041572048.1XP_041427982.1  splicing factor 3b subunit 4 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LEM3
    Related
    ENSXLAP00005083980.1, ENSXLAT00005085626.1
    Conserved Domains (1) summary
    TIGR01628
    Location:3150
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family