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kxd1.L KxDL motif containing 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446619, updated on 4-Nov-2024

Summary

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Official Symbol
kxd1.L
Official Full Name
KxDL motif containing 1 L homeolog
Primary source
Xenbase:XB-GENE-5898631
Locus tag
XELAEV_18006475mg
See related
EnsemblRapid:ENSXLAG00005022962 AllianceGenome:Xenbase:XB-GENE-5898631
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
kxd1; c19orf50
Summary
Predicted to act upstream of or within lysosome localization and vesicle-mediated transport. Predicted to be located in lysosomal membrane. Predicted to be part of BLOC-1 complex and BORC complex. Orthologous to human KXD1 (KxDL motif containing 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See kxd1.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (116135530..116144029)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (104010896..104019291)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121393530 Neighboring gene elongation factor RNA polymerase II L homeolog Neighboring gene FKBP prolyl isomerase 8 L homeolog Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1 L homeolog Neighboring gene required for excision 1-B domain containing L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC82257

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within lysosome localization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lysosome localization ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within vesicle-mediated transport ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
part_of BLOC-1 complex ISS
Inferred from Sequence or Structural Similarity
more info
  
part_of BORC complex IEA
Inferred from Electronic Annotation
more info
  
part_of BORC complex ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
  
located_in lysosome IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
kxDL motif-containing protein 1
Names
UPF0459 protein C19orf50 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093315.1 → NP_001086784.1  kxDL motif-containing protein 1

    See identical proteins and their annotated locations for NP_001086784.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077438
    UniProtKB/Swiss-Prot
    Q6DDT0
    Related
    ENSXLAP00005067561.1, ENSXLAT00005069095.1
    Conserved Domains (1) summary
    pfam10241
    Location:32 → 111
    KxDL; Uncharacterized conserved protein

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    116135530..116144029
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041580970.1 → XP_041436904.1  kxDL motif-containing protein 1 isoform X2

    UniProtKB/Swiss-Prot
    Q6DDT0
    UniProtKB/TrEMBL
    A0A8J1M5D6

  2. XM_041580968.1 → XP_041436902.1  kxDL motif-containing protein 1 isoform X2

    UniProtKB/Swiss-Prot
    Q6DDT0
    UniProtKB/TrEMBL
    A0A8J1M5D6

  3. XM_041580964.1 → XP_041436898.1  kxDL motif-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q6DDT0
    UniProtKB/TrEMBL
    A0A1L8HX51, A0A974DZY3
    Conserved Domains (1) summary
    pfam10241
    Location:32 → 111
    KxDL; Uncharacterized conserved protein
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6DDT0.2 GenPept UniProtKB/Swiss-Prot:Q6DDT0

Gene LinkOut

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