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kdm6a.S lysine demethylase 6A S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446609, updated on 17-Aug-2024

Summary

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Official Symbol
kdm6a.S
Official Full Name
lysine demethylase 6A S homeolog
Primary source
Xenbase:XB-GENE-960319
Locus tag
XELAEV_18014726mg
See related
EnsemblRapid:ENSXLAG00005025336
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
utx; uty; tutx; kdm6a; xtutx
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Genomic context

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Location:
chromosome: 2S
Exon count:
30
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (47825148..47912228, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (44983620..45071133, complement)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121400520 Neighboring gene DNA-dependent metalloprotease SPRTN-like Neighboring gene FUN14 domain containing 1 S homeolog Neighboring gene EF-hand domain containing 2 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC82191

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
lysine demethylase 6A S homeolog
Names
lysine (K)-specific demethylase 6A S homeolog
ubiquitously transcribed tetratricopeptide repeat gene, Y-linked

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093305.1 → NP_001086774.1  lysine demethylase 6A S homeolog

    See identical proteins and their annotated locations for NP_001086774.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077424
    UniProtKB/TrEMBL
    A0A974HV92, Q6AZS3
    Related
    ENSXLAP00005075561.1, ENSXLAT00005077139.1
    Conserved Domains (8) summary
    pfam02373
    Location:1187 → 1295
    JmjC; JmjC domain, hydroxylase
    smart00558
    Location:1153 → 1217
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    COG0457
    Location:37 → 317
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    pfam09606
    Location:385 → 835
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    sd00006
    Location:287 → 314
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:320 → 353
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:319 → 380
    TPR_11; TPR repeat
    pfam13431
    Location:274 → 305
    TPR_17; Tetratricopeptide repeat

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    47825148..47912228 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018248327.2 → XP_018103816.1  lysine demethylase 6A S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J0UIB7, A0A974HV92
    Related
    ENSXLAP00005075707.1, ENSXLAT00005077287.1

  2. XM_018248328.2 → XP_018103817.1  lysine demethylase 6A S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0UL61, A0A974HV92
    Related
    ENSXLAP00005075873.1, ENSXLAT00005077453.1
Nucleotide Protein Strain
Heading Accession and Version

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