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arf3.S ARF GTPase 3 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446529, updated on 4-Nov-2024

Summary

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Official Symbol
arf3.S
Official Full Name
ARF GTPase 3 S homeolog
Primary source
Xenbase:XB-GENE-952631
Locus tag
XELAEV_18015827mg
See related
EnsemblRapid:ENSXLAG00005035882 AllianceGenome:Xenbase:XB-GENE-952631
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
arf3
Summary
Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus and plasma membrane. Orthologous to human ARF3 (ADP ribosylation factor 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See arf3.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (127849817..127860320)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (118832770..118843748)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene Wnt family member 1 S homeolog Neighboring gene protein Wnt-10b Neighboring gene protein kinase, AMP-activated, gamma 1 non-catalytic subunit S homeolog Neighboring gene lysine methyltransferase 2D S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80261

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ADP ribosylation factor 3 S homeolog; ARF GTPase 3 S homeolog
Names
ADP-ribosylation factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093225.2 → NP_001086694.1  ARF GTPase 3 S homeolog

    See identical proteins and their annotated locations for NP_001086694.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077319
    UniProtKB/TrEMBL
    A0A974HWI5, Q6DE26
    Related
    ENSXLAP00005107286.1, ENSXLAT00005109411.1
    Conserved Domains (1) summary
    cl21455
    Location:5 → 179
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    127849817..127860320
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018248324.2 → XP_018103813.1  ADP ribosylation factor 3 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974HWI5, Q6DE26

  2. XM_018248326.2 → XP_018103815.1  ADP ribosylation factor 3 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974HWI5, Q6DE26
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials