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rbbp5.S retinoblastoma binding protein 5 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446510, updated on 17-Aug-2024

Summary

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Official Symbol
rbbp5.S
Official Full Name
retinoblastoma binding protein 5 S homeolog
Primary source
Xenbase:XB-GENE-942068
Locus tag
XELAEV_18014941mg
See related
EnsemblRapid:ENSXLAG00005010732
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
rbbp5
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Genomic context

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See rbbp5.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (62095464..62111568)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (58041580..58057253)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene ADP ribosylation factor like GTPase 8A S homeolog Neighboring gene ubiquitin conjugating enzyme E2T S homeolog Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene G protein-coupled receptor 37 like 1 S homeolog Neighboring gene E74 like ETS transcription factor 3 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC80141

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
part_of Set1C/COMPASS complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
retinoblastoma binding protein 5 S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093206.1 → NP_001086675.1  retinoblastoma binding protein 5 S homeolog

    See identical proteins and their annotated locations for NP_001086675.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077294
    UniProtKB/TrEMBL
    A0A974DH27, A0A974DH31, Q6DE48
    Related
    ENSXLAP00005031790.1, ENSXLAT00005032565.1
    Conserved Domains (3) summary
    COG2319
    Location:37 → 341
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:29 → 64
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:30 → 322
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    62095464..62111568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018248316.2 → XP_018103805.1  retinoblastoma binding protein 5 S homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0UL52, A0A974DH31
    Related
    ENSXLAP00005031793.1, ENSXLAT00005032568.1

  2. XM_041583166.1 → XP_041439100.1  retinoblastoma binding protein 5 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1MDE2, A0A974DH31
    Related
    ENSXLAP00005031786.1, ENSXLAT00005032561.1
    Conserved Domains (2) summary
    sd00039
    Location:29 → 64
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:30 → 322
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_041583167.1 → XP_041439101.1  retinoblastoma binding protein 5 S homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1MCM0, A0A974DH31
    Conserved Domains (3) summary
    COG0643
    Location:290 → 385
    CheA; Chemotaxis protein histidine kinase CheA [Cell motility, Signal transduction mechanisms]
    sd00039
    Location:27 → 63
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:30 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. XM_041583168.1 → XP_041439102.1  retinoblastoma binding protein 5 S homeolog isoform X4

    UniProtKB/TrEMBL
    A0A8J1MBM8, A0A974DH31
    Related
    ENSXLAP00005031782.1, ENSXLAT00005032557.1
    Conserved Domains (3) summary
    COG0643
    Location:290 → 385
    CheA; Chemotaxis protein histidine kinase CheA [Cell motility, Signal transduction mechanisms]
    sd00039
    Location:27 → 63
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:30 → 315
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein Strain
Heading Accession and Version

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