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hal.L histidine ammonia-lyase, gene 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446479, updated on 2-Oct-2024

Summary

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Official Symbol
hal.L
Official Full Name
histidine ammonia-lyase, gene 1 L homeolog
Primary source
Xenbase:XB-GENE-5808243
Locus tag
XELAEV_18017500mg
See related
EnsemblRapid:ENSXLAG00005003576
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
hal; HAL1; hstd; xhal; hal.1; hal.1.L
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Genomic context

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See hal.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
20
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (64027480..64040853, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (49590407..49603777, complement)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 38 L homeolog Neighboring gene amidohydrolase domain containing 1 L homeolog Neighboring gene histidine ammonia-lyase, gene 2 L homeolog Neighboring gene SLIT-ROBO Rho GTPase activating protein 1 L homeolog Neighboring gene KICSTOR subunit 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC79072

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables histidine ammonia-lyase activity IEA
Inferred from Electronic Annotation
more info
  
enables lyase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within L-histidine catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within L-histidine catabolic process to glutamate and formamide IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within L-histidine catabolic process to glutamate and formate IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within L-histidine metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
histidine ammonia-lyase, gene 1 L homeolog
NP_001086644.1
XP_018106500.2
XP_041441053.1
XP_041441054.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093175.1 → NP_001086644.1  histidine ammonia-lyase, gene 1 L homeolog

    See identical proteins and their annotated locations for NP_001086644.1

    Status: PROVISIONAL

    Source sequence(s)
    BC077229
    UniProtKB/TrEMBL
    A0A974DCG6, Q6AZU6
    Related
    ENSXLAP00005010652.1, ENSXLAT00005010819.1
    Conserved Domains (2) summary
    TIGR01225
    Location:114 → 624
    hutH; histidine ammonia-lyase
    pfam12053
    Location:15 → 86
    DUF3534; Domain of unknown function (DUF3534)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    64027480..64040853 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041585119.1 → XP_041441053.1  histidine ammonia-lyase, gene 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1MHR5, A0A974DCG6
    Related
    ENSXLAP00005010649.1, ENSXLAT00005010815.1
    Conserved Domains (1) summary
    TIGR01225
    Location:114 → 582
    hutH; histidine ammonia-lyase

  2. XM_018251011.2 → XP_018106500.2  histidine ammonia-lyase, gene 1 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A8J0UNK0, A0A974DCG6
    Conserved Domains (1) summary
    TIGR01225
    Location:31 → 541
    hutH; histidine ammonia-lyase

  3. XM_041585120.1 → XP_041441054.1  histidine ammonia-lyase, gene 1 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J1MH56, A0A974DCG6
    Conserved Domains (1) summary
    TIGR01225
    Location:25 → 535
    hutH; histidine ammonia-lyase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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