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nop58.L NOP58 ribonucleoprotein L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446463, updated on 17-Aug-2024

Summary

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Official Symbol
nop58.L
Official Full Name
NOP58 ribonucleoprotein L homeolog
Primary source
Xenbase:XB-GENE-990563
Locus tag
XELAEV_18044939mg
See related
EnsemblRapid:ENSXLAG00005024531
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
nop5; nop58; nop58-a; nop58-b; nop5/nop58
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Genomic context

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See nop58.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (89815852..89836274, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (79234166..79254662, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 117 member B L homeolog Neighboring gene bone morphogenetic protein receptor type II L homeolog Neighboring gene small nucleolar RNA SNORD11 Neighboring gene small nucleolar RNA SNORD11 Neighboring gene small nucleolar RNA SNORD11 Neighboring gene small nucleolar RNA SNORD70 Neighboring gene small nucleolar RNA SNORD70 Neighboring gene small ubiquitin like modifier 1 L homeolog Neighboring gene uncharacterized protein KIAA2012

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC78950

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of box C/D methylation guide snoRNP complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
NOP58 ribonucleoprotein L homeolog
Names
NOP58 ribonucleoprotein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093159.1 → NP_001086628.1  NOP58 ribonucleoprotein L homeolog

    See identical proteins and their annotated locations for NP_001086628.1

    Status: PROVISIONAL

    Source sequence(s)
    BC122512
    UniProtKB/TrEMBL
    A0A974H3R1, A0A974H476, Q0P3Q8
    Related
    ENSXLAP00005072808.1, ENSXLAT00005074368.1
    Conserved Domains (3) summary
    smart00931
    Location:163 → 214
    NOSIC; NOSIC (NUC001) domain
    pfam01798
    Location:169 → 397
    Nop; snoRNA binding domain, fibrillarin
    pfam08156
    Location:2 → 66
    NOP5NT; NOP5NT (NUC127) domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    89815852..89836274 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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