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tmem171.L transmembrane protein 171 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446409, updated on 4-Nov-2024

Summary

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Official Symbol
tmem171.L
Official Full Name
transmembrane protein 171 L homeolog
Primary source
Xenbase:XB-GENE-985792
Locus tag
XELAEV_18008145mg
See related
EnsemblRapid:ENSXLAG00005008107 AllianceGenome:Xenbase:XB-GENE-985792
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
tmem171
Summary
Predicted to be located in membrane. Orthologous to human TMEM171 (transmembrane protein 171). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See tmem171.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (199261210..199275823)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (186140817..186155477)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene transportin 1 L homeolog Neighboring gene FCH and mu domain containing endocytic adaptor 2 L homeolog Neighboring gene transmembrane protein 174 gene 2 L homeolog Neighboring gene forkhead box D1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC83830

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane protein 171 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093105.1 → NP_001086574.1  transmembrane protein 171 L homeolog

    See identical proteins and their annotated locations for NP_001086574.1

    Status: PROVISIONAL

    Source sequence(s)
    BC076826
    UniProtKB/TrEMBL
    A0A974E471, Q6DFB4
    Conserved Domains (1) summary
    pfam15471
    Location:16 → 304
    TMEM171; Transmembrane protein family 171

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    199261210..199275823
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018246252.2 → XP_018101741.1  transmembrane protein 171 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974E471, Q6DFB4

  2. XM_018246261.2 → XP_018101750.1  transmembrane protein 171 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A974E471, Q6DFB4
    Related
    ENSXLAP00005023235.1, ENSXLAT00005023940.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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