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agps.L alkylglycerone phosphate synthase L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446408, updated on 4-Nov-2024

Summary

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Official Symbol
agps.L
Official Full Name
alkylglycerone phosphate synthase L homeolog
Primary source
Xenbase:XB-GENE-960797
Locus tag
XELAEV_18044727mg
See related
EnsemblRapid:ENSXLAG00005023819 AllianceGenome:Xenbase:XB-GENE-960797
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
agps
Summary
Predicted to enable FAD binding activity and alkylglycerone-phosphate synthase activity. Predicted to act upstream of or within ether lipid biosynthetic process. Predicted to be located in peroxisome. Human ortholog(s) of this gene implicated in rhizomelic chondrodysplasia punctata and rhizomelic chondrodysplasia punctata type 3. Orthologous to human AGPS (alkylglycerone phosphate synthase). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See agps.L in Genome Data Viewer
Location:
chromosome: 9_10L
Exon count:
20
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (77752105..77870674, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (67242446..67361108, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) Unplaced Scaffold NW_016710067.1 (1..812, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene cytochrome c, testis L homeolog Neighboring gene phosphodiesterase 11A L homeolog Neighboring gene NFE2 like bZIP transcription factor 2 L homeolog Neighboring gene heterogeneous nuclear ribonucleoprotein A3 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC83829

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables FAD binding IEA
Inferred from Electronic Annotation
more info
  
enables alkylglycerone-phosphate synthase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within ether lipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
alkyldihydroxyacetonephosphate synthase, peroxisomal
NP_001086573.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093104.1 → NP_001086573.1  alkyldihydroxyacetonephosphate synthase, peroxisomal

    See identical proteins and their annotated locations for NP_001086573.1

    Status: PROVISIONAL

    Source sequence(s)
    BC076825
    UniProtKB/TrEMBL
    A0A974BZ73, Q6DFB5
    Related
    ENSXLAP00005070556.1, ENSXLAT00005072097.1
    Conserved Domains (3) summary
    COG0277
    Location:169 → 621
    GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
    pfam01565
    Location:175 → 316
    FAD_binding_4; FAD binding domain
    pfam02913
    Location:354 → 619
    FAD-oxidase_C; FAD linked oxidases, C-terminal domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    77752105..77870674 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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