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slc41a2.L solute carrier family 41 member 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446404, updated on 4-Nov-2024

Summary

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Official Symbol
slc41a2.L
Official Full Name
solute carrier family 41 member 2 L homeolog
Primary source
Xenbase:XB-GENE-955992
Locus tag
XELAEV_18017401mg
See related
EnsemblRapid:ENSXLAG00005006417 AllianceGenome:Xenbase:XB-GENE-955992
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
slc41a2
Summary
Predicted to enable inorganic cation transmembrane transporter activity and monoatomic cation transmembrane transporter activity. Predicted to act upstream of or within metal ion transport. Predicted to be located in plasma membrane. Orthologous to human SLC41A2 (solute carrier family 41 member 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See slc41a2.L in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (57489684..57530048, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (43027175..43067142, complement)

Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene thioredoxin reductase 1 L homeolog Neighboring gene carbohydrate (chondroitin 4) sulfotransferase 11 L homeolog Neighboring gene NOP protein chaperone 1 L homeolog Neighboring gene ARP6 actin related protein 6 homolog L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC83802

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables inorganic cation transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables monoatomic cation transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cobalt ion transport ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within iron ion transport ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within magnesium ion transport ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within manganese ion transport ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within metal ion transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within monoatomic cation transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within nickel cation transport ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
solute carrier family 41 member 2
Names
solute carrier family 41 (magnesium transporter), member 2 L homeolog
solute carrier family 41, member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001093100.1 → NP_001086569.1  solute carrier family 41 member 2

    See identical proteins and their annotated locations for NP_001086569.1

    Status: PROVISIONAL

    Source sequence(s)
    BC076819
    UniProtKB/Swiss-Prot
    Q6DFC0
    UniProtKB/TrEMBL
    A0A974HSD5
    Related
    ENSXLAP00005019104.1, ENSXLAT00005019439.1
    Conserved Domains (1) summary
    pfam01769
    Location:188 → 319
    MgtE; Divalent cation transporter

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    57489684..57530048 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018251006.2 → XP_018106495.1  solute carrier family 41 member 2 isoform X1

    UniProtKB/Swiss-Prot
    Q6DFC0
    UniProtKB/TrEMBL
    A0A974HSD5
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6DFC0.1 GenPept UniProtKB/Swiss-Prot:Q6DFC0

Gene LinkOut

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