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traf4.S TNF receptor associated factor 4 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446373, updated on 4-Nov-2024

Summary

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Official Symbol
traf4.S
Official Full Name
TNF receptor associated factor 4 S homeolog
Primary source
Xenbase:XB-GENE-6251481
Locus tag
XELAEV_18014157mg
See related
EnsemblRapid:ENSXLAG00005024119 AllianceGenome:Xenbase:XB-GENE-6251481
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
cart1; mln62; rnf83; traf4; traf-4; traf4-a; traf4-b
Summary
Orthologous to human TRAF4 (TNF receptor associated factor 4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See traf4.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (4177010..4219063)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (4185989..4230996)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD42 Neighboring gene ribosomal protein L23a S homeolog Neighboring gene NIMA-related kinase 8 S homeolog Neighboring gene family with sequence similarity 222 member B S homeolog Neighboring gene uncharacterized LOC121400387

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC83213

General protein information

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Preferred Names
TNF receptor associated factor 4 S homeolog; TNF receptor-associated factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    4177010..4219063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041583318.1 → XP_041439252.1  TNF receptor-associated factor 4

    UniProtKB/TrEMBL
    A0A1L8H4T0, A0A974DFU0, Q6DFG9
    Related
    ENSXLAP00005071474.1, ENSXLAT00005073021.1
    Conserved Domains (5) summary
    PLN03086
    Location:88 → 211
    PLN03086; PRLI-interacting factor K; Provisional
    cd03781
    Location:308 → 463
    MATH_TRAF4; Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1. TRAF molecules serve as adapter ...
    pfam02176
    Location:210 → 269
    zf-TRAF; TRAF-type zinc finger
    cd16641
    Location:15 → 59
    mRING-HC-C3HC3D_TRAF4; Modified RING finger, HC subclass (C3HC3D-type), found in tumor necrosis factor (TNF) receptor-associated factor 4 (TRAF4) and similar proteins
    cl40617
    Location:102 → 156
    zf-TRAF; TRAF-type zinc finger

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001093069.1: Suppressed sequence

    Description
    NM_001093069.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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