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msantd4.S Myb/SANT DNA binding domain containing 4 with coiled-coils S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 446350, updated on 4-Nov-2024

Summary

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Official Symbol
msantd4.S
Official Full Name
Myb/SANT DNA binding domain containing 4 with coiled-coils S homeolog
Primary source
Xenbase:XB-GENE-5752141
Locus tag
XELAEV_18016273mg
See related
EnsemblRapid:ENSXLAG00005020020 AllianceGenome:Xenbase:XB-GENE-5752141
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
msantd4; BC014729; kiaa1826
Summary
Predicted to enable DNA binding activity. Orthologous to human MSANTD4 (Myb/SANT DNA binding domain containing 4 with coiled-coils). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See msantd4.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (152020439..152034809, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (143002926..143018803, complement)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene platelet derived growth factor D S homeolog Neighboring gene glutamate receptor, ionotropic, AMPA 4 S homeolog Neighboring gene uncharacterized LOC108709986 Neighboring gene kelch repeat and BTB (POZ) domain containing 3 S homeolog Neighboring gene aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC81432

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Myb/SANT DNA binding domain containing 4 with coiled-coils S homeolog; myb/SANT-like DNA-binding domain-containing protein 4
Names
Myb/SANT-like DNA-binding domain containing 4 with coiled-coils S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    152020439..152034809 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018248306.2 → XP_018103795.1  myb/SANT-like DNA-binding domain-containing protein 4 isoform X3

    UniProtKB/TrEMBL
    A0A8J0UH02
    Related
    ENSXLAP00005058655.1, ENSXLAT00005060079.1

  2. XM_018248302.2 → XP_018103791.1  myb/SANT-like DNA-binding domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A1L8HAS8, A0A974DJY8
    Related
    ENSXLAP00005058665.1, ENSXLAT00005060093.1

  3. XM_018248304.2 → XP_018103793.1  myb/SANT-like DNA-binding domain-containing protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A1L8HAS8, A0A974DJY8

  4. XM_018248308.2 → XP_018103797.1  myb/SANT-like DNA-binding domain-containing protein 4 isoform X4

    UniProtKB/TrEMBL
    A0A8J0UL47
    Related
    ENSXLAP00005058682.1, ENSXLAT00005060115.1

  5. XM_018248305.2 → XP_018103794.1  myb/SANT-like DNA-binding domain-containing protein 4 isoform X2

    UniProtKB/TrEMBL
    Q6DFJ7
    Related
    ENSXLAP00005058658.1, ENSXLAT00005060084.1

  6. XM_018248309.2 → XP_018103798.1  myb/SANT-like DNA-binding domain-containing protein 4 isoform X5

    UniProtKB/TrEMBL
    A0A8J0UIG0

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001093046.1: Suppressed sequence

    Description
    NM_001093046.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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