trappc5.L trafficking protein particle complex subunit 5 L homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: trappc5.L
Official Full Name: trafficking protein particle complex subunit 5 L homeolog
Primary source: Xenbase:XB-GENE-6251495
Locus tag: XELAEV_18043778mg
See related: EnsemblRapid:ENSXLAG00005029057
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: trappc5
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Genomic context

Location:: chromosome: 9_10L

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10L	NC_054387.1 (29950348..29955601, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10L	NC_030740.1 (24434229..24440039, complement)

Chromosome 9_10L - NC_054387.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within Golgi vesicle transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within endoplasmic reticulum to Golgi vesicle-mediated transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within vesicle-mediated transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info
part_of TRAPP complex	IEA Inferred from Electronic Annotation more info
part_of TRAPPI protein complex	IEA Inferred from Electronic Annotation more info
part_of TRAPPII protein complex	IEA Inferred from Electronic Annotation more info
part_of TRAPPIII protein complex	IEA Inferred from Electronic Annotation more info
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: trafficking protein particle complex subunit 5 L homeolog

Names: trafficking protein particle complex 5 L homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001093026.1 → NP_001086495.1 trafficking protein particle complex subunit 5 L homeolog

See identical proteins and their annotated locations for NP_001086495.1

Status: PROVISIONAL

Source sequence(s)

BC076644

UniProtKB/TrEMBL

A0A974H371, Q6DFT9

Conserved Domains (1) summary

cd14943
Location:24 → 175

TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

29950348..29955601 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)